Changelog

Source: NEWS.md

MethylSurroGetR 0.0.0.9000

New Features

• Initial package development
• Core workflow functions:
  • surro_set() - Create surrogate objects from methylation data and weights
  • reference_fill() - Fill missing probes with reference values
  • impute_obs() - Impute missing observations using mean or median
  • surro_calc() - Calculate surrogate predictions with multiple transformations
• Missing data assessment with methyl_miss()
• Beta value and M-value conversion functions:
  • convert_beta_to_m() - Convert beta values to M-values
  • convert_m_to_beta() - Convert M-values to beta values
• Comprehensive input validation and error messages
• Detailed diagnostic reporting options
• Support for linear, probability (logistic), and count (Poisson) transformations
• Example datasets for testing and learning

Documentation

• Added “Getting Started with MethylSurroGetR” vignette
• Complete function documentation with examples
• Package website at https://jagoode27.github.io/MethylSurroGetR/