A methyl_surro object constructed from beta_matrix_comp and wts_vec_lin.
Format
An object of class methyl_surro, containing the following components:
- methyl
A matrix of methylation data with CpG sites as row names. Some values are missing, simulating incomplete data scenarios.
- weights
A named numeric vector representing the weights for the CpG sites, excluding the intercept.
- intercept
The numeric value of the intercept term, or
NULLif not applicable.
Examples
data(methyl_surro_comp)
str(methyl_surro_comp)
#> List of 3
#> $ methyl : num [1:10, 1:5] 0.288 0.9 0.89 0.963 0.143 ...
#> ..- attr(*, "dimnames")=List of 2
#> .. ..$ : chr [1:10] "cg02" "cg07" "cg08" "cg13" ...
#> .. ..$ : chr [1:5] "samp1" "samp2" "samp3" "samp4" ...
#> $ weights : Named num [1:10] -0.00908 -0.00116 0.00598 -0.00756 0.00122 ...
#> ..- attr(*, "names")= chr [1:10] "cg02" "cg03" "cg06" "cg07" ...
#> $ intercept: Named num 1.21
#> ..- attr(*, "names")= chr "Intercept"
#> - attr(*, "class")= chr "methyl_surro"